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2019 GTC San Jose
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S9350 - CUDA-Accelerated Short-Read Alignment to a Large Reference Genome

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Session Description

We'll discuss the computational challenge of aligning short DNA reads to very large reference genomes, a problem that tests the limits of computing hardware. We'll explain how adapting a CUDA-accelerated short-read aligner to handle these genomes resulted in a tenfold reduction in execution time.


Additional Information
Genomics/Bioinformatics
Genomics/Bioinformatics, Performance Optimization
Software
Intermediate technical
Talk.1
50 minutes
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